two problems:

there seems to be a limit for the numbers of targets, stored in the tool (12). Can this be changed
the sorting routine no longer sorts systems in a logic maner.
Beside that antigame no longer seems to catch address for a planet as easy as it used to.

Sorting targets by coordinates is coming with the next update, for now only "by player" is possible.
For the changed autocopy features see changelog, it's working much more easier then before.